STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3422Transcriptional regulator with cupin sensor, AraC family; PFAM: glycoside hydrolase family 39, Helix-turn-helix, AraC domain-containing protein, Cupin 2 conserved barrel domain protein; KEGG: AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain-containing protein. (819 aa)    
Predicted Functional Partners:
Bccel_2134
KEGG: AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC domain-containing protein, AraC protein arabinose-binding/dimerization; SMART: Helix-turn-helix, AraC domain-containing protein.
 
 0.854
Bccel_2133
Beta-mannosidase; KEGG: glycoside hydrolase family protein; PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich, glycoside hydrolase family 2 sugar binding protein; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.853
Bccel_0217
KEGG: AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC domain-containing protein, AraC protein arabinose-binding/dimerization; SMART: Helix-turn-helix, AraC domain-containing protein.
  
  
  0.836
Bccel_3245
KEGG: AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein.
  
  
  0.832
Bccel_0692
Transcriptional regulator, AraC family; KEGG: DNA-binding domain-containing protein; PFAM: Helix-turn-helix, AraC domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein.
  
  
  0.831
Bccel_2705
Transcriptional regulator with only HTH domain, AraC family; KEGG: DNA-binding domain-containing protein; PFAM: Helix-turn-helix, AraC domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein.
  
  
  0.819
Bccel_3831
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, Pyruvate/ketoisovalerate oxidoreductase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, Transketolase domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein.
     
 0.800
Bccel_3300
KEGG: hypothetical protein.
     
 0.779
Bccel_3490
KEGG: glutamate synthase family protein; PFAM: ferredoxin-dependent glutamate synthase, glutamine amidotransferase class-II, glutamate synthase alpha subunit domain protein, glutamate synthase.
    
  0.770
Bccel_1567
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein.
     
 0.765
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.