STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3467PFAM: integrase family protein; KEGG: site-specific recombinase XerD-like protein; overlaps another CDS with the same product name. (327 aa)    
Predicted Functional Partners:
Bccel_3466
PFAM: integrase family protein; KEGG: integrase family protein; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
 
     0.946
Bccel_3468
PFAM: integrase family protein, integrase domain protein SAM domain protein; KEGG: integrase/recombinase; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
 
     0.946
Bccel_4319
PFAM: integrase family protein; KEGG: integrase family protein; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.775
Bccel_4321
PFAM: integrase family protein; KEGG: integrase family protein; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.775
Bccel_4323
PFAM: integrase family protein, integrase domain protein SAM domain protein; KEGG: integrase family protein; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.775
Bccel_4317
PFAM: integrase family protein; KEGG: integrase family protein; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.774
Bccel_5522
PFAM: integrase family protein, integrase domain protein SAM domain protein; KEGG: integrase/recombinase; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.774
Bccel_5524
PFAM: integrase family protein; KEGG: integrase family protein; overlaps another CDS with the same product name.
  
     0.774
Bccel_5149
PFAM: integrase family protein; KEGG: xerC, protein XerC.
  
     0.772
Bccel_5888
PFAM: integrase family protein; KEGG: integrase/recombinase; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
  
     0.772
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.