Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3470KEGG: hypothetical protein. (91 aa)    
Predicted Functional Partners:
Bccel_3469
PFAM: transposase IS66, Transposase IS66, predicted helix-turn-helix domain, Transposase TnpC, homeodomain; KEGG: hypothetical protein.
       0.773
Bccel_3466
PFAM: integrase family protein; KEGG: integrase family protein; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
       0.407
Bccel_3467
PFAM: integrase family protein; KEGG: site-specific recombinase XerD-like protein; overlaps another CDS with the same product name.
       0.407
Bccel_3468
PFAM: integrase family protein, integrase domain protein SAM domain protein; KEGG: integrase/recombinase; overlaps another CDS with the same product name; Belongs to the 'phage' integrase family.
       0.407
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.