STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3491TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; KEGG: NADH/NADPH-dependent glutamate synthase small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, FAD-dependent pyridine nucleotide-disulfide oxidoreductase. (494 aa)    
Predicted Functional Partners:
Bccel_3490
KEGG: glutamate synthase family protein; PFAM: ferredoxin-dependent glutamate synthase, glutamine amidotransferase class-II, glutamate synthase alpha subunit domain protein, glutamate synthase.
 0.999
Bccel_4118
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein, Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain-containing protein; KEGG: oxidoreductase FAD/NAD(P)-binding domain-containing protein.
 
 0.985
Bccel_4116
Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase, Glu/Leu/Phe/Val dehydrogenase dimerization region; KEGG: glutamate dehydrogenase/leucine dehydrogenase; SMART: Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.956
Bccel_2281
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, NADH dehydrogenase (ubiquinone) 24 kDa subunit, NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein, Soluble ligand binding domain-containing protein; KEGG: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein.
 
 
 0.949
Bccel_0986
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit, NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein, Soluble ligand binding domain-containing protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: respiratory-chain NADH dehydrogenase domain 51 kDa subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein.
 
 
 0.945
Bccel_1567
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein.
 
 
 0.932
Bccel_3831
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, Pyruvate/ketoisovalerate oxidoreductase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, Transketolase domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein.
 
 
 0.926
Bccel_0982
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 
 0.905
Bccel_4071
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit, NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein, Soluble ligand binding domain-containing protein, NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH dehydrogenase (quinone); SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein.
   
 0.898
Bccel_1479
6-deoxyerythronolide-B synthase; PFAM: KR domain protein, acyl carrier protein familyprotein, Beta-ketoacyl synthase, Acyl transferase; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
    
 0.884
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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