Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_3543PFAM: aminotransferase class V; KEGG: SufS subfamily cysteine desulfurase. (133 aa)    
Predicted Functional Partners:
Bccel_3544
Cysteine desulfurase; KEGG: aminotransferase; PFAM: aminotransferase class V.
     0.992
Bccel_3542
KEGG: transcriptional regulator, crp/fnr family; PFAM: cyclic nucleotide-binding protein; SMART: cyclic nucleotide-binding protein.
  
  0.956
Bccel_1513
KEGG: FeS cluster assembly scaffold protein NifU; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein.
  
 0.920
Bccel_4743
PFAM: nitrogen-fixing NifU domain protein; KEGG: hypothetical protein.
  
 0.920
Bccel_5434
Hypothetical protein; KEGG: NifU-like domain-containing protein.
  
 0.904
Bccel_1845
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: algA, mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase, mannose-6-phosphate isomerase type II; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.766
Bccel_2814
KEGG: thioredoxin-disulfide reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, Thioredoxin domain-containing protein; overlaps another CDS with the same product name.
  
 
  0.764
Bccel_2815
Thioredoxin-disulfide reductase; KEGG: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain; overlaps another CDS with the same product name.
  
 
  0.764
Bccel_3003
TIGRFAM: cysteine desulfurase family protein; KEGG: Cysteine desulfurase; PFAM: aminotransferase class V.
  
     0.757
Bccel_0662
TIGRFAM: cysteine desulfurase family protein; KEGG: cysteine desulfurase; PFAM: aminotransferase class V.
  
     0.714
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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