Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Bccel_3548PFAM: Radical SAM domain protein; KEGG: radical SAM protein. (290 aa)    
Predicted Functional Partners:
Bccel_3547
PFAM: AMMECR1 domain protein; KEGG: hypothetical protein.
 
     0.953
Bccel_3546
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: hypothetical protein.
 
     0.950
Bccel_0979
Acetaldehyde dehydrogenase (acetylating); KEGG: alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase, Aldehyde Dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.806
Bccel_1320
TIGRFAM: formate acetyltransferase; KEGG: formate acetyltransferase 1; PFAM: pyruvate formate-lyase PFL, formate C-acetyltransferase glycine radical.
  
 
 0.783
Bccel_4489
TIGRFAM: formate acetyltransferase; KEGG: formate acetyltransferase 1; PFAM: pyruvate formate-lyase PFL, formate C-acetyltransferase glycine radical.
  
 
 0.783
Bccel_2691
KEGG: iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase.
  
 
 0.668
Bccel_3243
KEGG: alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase.
  
 
 0.668
Bccel_3385
PFAM: UPF0103/Mediator of ErbB2-driven cell motility-containing protein; KEGG: hypothetical protein.
 
     0.667
Bccel_1505
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: BFD/(2Fe-2S)-binding domain-containing protein.
  
  
 0.515
dacA
Conserved hypothetical protein CHP00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.507
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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