Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_3554PFAM: DinB family protein; KEGG: putative DinB family protein. (169 aa)    
Predicted Functional Partners:
Bccel_3555
PFAM: AICARFT/IMPCHase bienzyme; KEGG: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme.
  
    0.724
Bccel_3556
PFAM: Endoribonuclease L-PSP; KEGG: endoribonuclease L-PSP.
       0.624
Bccel_5082
Histidine kinase; KEGG: multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.552
Bccel_0682
Histidine kinase; KEGG: response regulator receiver/sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.527
Bccel_3731
KEGG: integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein.
 
     0.501
Bccel_5244
KEGG: Signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.483
Bccel_3557
Hypothetical protein; KEGG: alpha/beta hydrolase.
       0.477
Bccel_5083
PFAM: Protein of unknown function DUF3369, metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: response regulator.
  
     0.458
dinB-2
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.457
Bccel_1175
PFAM: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
 
     0.439
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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