STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3573PFAM: DinB family protein; KEGG: DinB family. (171 aa)    
Predicted Functional Partners:
Bccel_3574
PFAM: peptidase A8 signal peptidase II; KEGG: signal peptidase.
       0.693
Bccel_5083
PFAM: Protein of unknown function DUF3369, metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: response regulator.
  
     0.511
Bccel_5082
Histidine kinase; KEGG: multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.480
Bccel_0682
Histidine kinase; KEGG: response regulator receiver/sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.472
Bccel_0683
KEGG: response regulator receiver modulated metal dependent phosphohydrolase; PFAM: Protein of unknown function DUF3369, metal-dependent phosphohydrolase HD sub domain-containing protein, response regulator receiver; SMART: metal-dependent phosphohydrolase HD region, response regulator receiver.
  
     0.462
Bccel_5241
KEGG: response regulator receiver modulated metal dependent phosphohydrolase; PFAM: Protein of unknown function DUF3369, metal-dependent phosphohydrolase HD sub domain-containing protein, response regulator receiver; SMART: metal-dependent phosphohydrolase HD region, response regulator receiver.
  
     0.458
Bccel_3731
KEGG: integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein.
 
     0.445
Bccel_5244
KEGG: Signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.445
Bccel_0898
PFAM: multicopper oxidase type 3, multicopper oxidase type 2; KEGG: putative multicopper oxidase.
  
     0.401
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.