Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bccel_3576KEGG: hypothetical protein. (62 aa)    
Predicted Functional Partners:
Bccel_3575
Band 7 protein; KEGG: membrane protease subunit, stomatin/prohibitin; PFAM: band 7 protein; SMART: band 7 protein.
 
  
 0.990
Bccel_0846
Band 7 protein; KEGG: hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein.
  
  
 0.698
Bccel_3577
PFAM: Golgi phosphoprotein 3; KEGG: hypothetical protein.
       0.574
Bccel_4579
PFAM: Peptidase M23; KEGG: membrane-bound metallopeptidase.
  
     0.446
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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