STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3611KEGG: 4Fe-4S binding domain/FMN-binding domain-containing protein; PFAM: FMN-binding domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SMART: FMN-binding domain protein. (466 aa)    
Predicted Functional Partners:
Bccel_3612
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
  
 0.929
Bccel_2660
KEGG: hypothetical protein.
  
 
  0.825
Bccel_0979
Acetaldehyde dehydrogenase (acetylating); KEGG: alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase, Aldehyde Dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.685
argH
PFAM: Lyase 1, N-terminal; TIGRFAM: argininosuccinate lyase; HAMAP : Argininosuccinate lyase; KEGG: argininosuccinate lyase.
    
  0.682
Bccel_3840
TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region.
    
 0.640
Bccel_1504
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
  0.526
Bccel_1024
KEGG: hypothetical protein.
  
 
 0.522
Bccel_2577
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: hypothetical protein.
 
     0.498
Bccel_4996
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein-like protein; KEGG: L-aspartate oxidase.
    
  0.488
Bccel_4997
KEGG: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
    
  0.488
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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