STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3721PFAM: Protein of unknown function DUF4364; KEGG: hypothetical protein. (180 aa)    
Predicted Functional Partners:
Bccel_3411
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: single-stranded DNA-binding protein.
 
     0.836
Bccel_5108
KEGG: DnaD-like protein; TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region.
  
     0.764
Bccel_5107
KEGG: DNA replication protein; PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase.
  
     0.763
Bccel_4013
KEGG: hypothetical protein.
  
     0.721
Bccel_4865
KEGG: hypothetical protein.
  
     0.712
Bccel_2431
Hypothetical protein; KEGG: AAA ATPase.
  
    0.688
Bccel_4993
KEGG: LysM repeat-containing protein; PFAM: Domain of unknown function DUF3794, Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
  
     0.642
Bccel_4895
DNA-(apurinic or apyrimidinic site) lyase; PFAM: 8-oxoguanine DNA glycosylase domain-containing protein, HhH-GPD family protein; KEGG: 3-methyladenine DNA glycosylase; SMART: HhH-GPD family protein.
  
     0.625
Bccel_4416
PFAM: Colicin V production protein; KEGG: putative membrane protein, required for colicin V production.
  
     0.624
Bccel_3720
Hypothetical protein; KEGG: 4Fe-4S ferredoxin.
 
     0.595
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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