STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3740KEGG: hypothetical protein; HAMAP : UPF0473 protein; PFAM: protein of unknown function DUF1292; Belongs to the UPF0473 family. (98 aa)    
Predicted Functional Partners:
Bccel_3741
Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.921
Bccel_3743
KEGG: hypothetical protein; HAMAP : UPF0297 protein; PFAM: protein of unknown function DUF965; Belongs to the UPF0297 family.
  
  
 0.859
Bccel_4042
Hypothetical protein; KEGG: Peptidase propeptide domain-containing protein.
  
     0.554
Bccel_3742
PFAM: NADP-dependent oxidoreductase domain, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: aldo/keto reductase.
       0.536
Bccel_1099
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: small, acid-soluble spore protein, alpha/beta type.
  
     0.532
Bccel_0551
KEGG: hypothetical protein.
  
     0.493
Bccel_3739
PFAM: Protein of unknown function DUF3048; KEGG: hypothetical protein.
       0.487
Bccel_4257
KEGG: hypothetical protein.
   
    0.487
Bccel_2047
PFAM: Protein of unknown function DUF4363; KEGG: hypothetical protein.
  
     0.481
Bccel_4744
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.480
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.