STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3743KEGG: hypothetical protein; HAMAP : UPF0297 protein; PFAM: protein of unknown function DUF965; Belongs to the UPF0297 family. (84 aa)    
Predicted Functional Partners:
Bccel_3741
Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
 
    0.934
Bccel_3740
KEGG: hypothetical protein; HAMAP : UPF0473 protein; PFAM: protein of unknown function DUF1292; Belongs to the UPF0473 family.
  
  
 0.859
Bccel_0666
Putative transcriptional regulator with HTH domain containing protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.774
Bccel_0727
PFAM: protein of unknown function DUF633; KEGG: hypothetical protein.
  
     0.765
Bccel_2910
KEGG: hypothetical protein.
 
    0.761
Bccel_5653
PFAM: protein of unknown function DUF951; KEGG: hypothetical protein.
  
     0.754
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
     0.688
Bccel_3742
PFAM: NADP-dependent oxidoreductase domain, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: aldo/keto reductase.
 
     0.684
Bccel_3767
PFAM: polysaccharide biosynthesis protein; KEGG: hypothetical protein.
  
     0.678
Bccel_2675
KEGG: stage V sporulation protein B; TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein.
  
     0.672
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.