STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3749KEGG: endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10, S-layer domain-containing protein, protein of unknown function DUF303 acetylesterase, Carbohydrate-binding CenC domain protein, polysaccharide deacetylase; SMART: glycoside hydrolase family 10. (2569 aa)    
Predicted Functional Partners:
Bccel_3299
KEGG: alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein, glycosyl hydrolase 67 C-teriminal domain protein, glycoside hydrolase family 67; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.747
Bccel_1006
PFAM: polysaccharide deacetylase; KEGG: polysaccharide deacetylase; overlaps another CDS with the same product name.
  
   
 0.730
Bccel_3114
KEGG: glycoside hydrolase; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV.
  
 
   0.720
Bccel_2822
PFAM: glycoside hydrolase family 43; KEGG: alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.700
Bccel_3083
KEGG: alpha-L-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
  
 0.687
Bccel_3097
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43, Carbohydrate binding family 6; KEGG: beta-xylosidase; SMART: cellulose binding type IV; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.686
Bccel_0857
KEGG: endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11, Carbohydrate binding family 6; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.669
Bccel_1260
Endo-1,4-beta-xylanase; KEGG: glycoside hydrolase family protein; PFAM: glycoside hydrolase family 11; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.661
Bccel_3115
PFAM: glycoside hydrolase family 43; KEGG: glycoside hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.660
Bccel_5635
KEGG: BNR/Asp-box repeat protein,dockerin-like protein.
  
     0.656
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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