STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3887Glutamine--scyllo-inositol transaminase; KEGG: spore coat polysaccharide biosynthesis protein SpsC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (365 aa)    
Predicted Functional Partners:
Bccel_4913
PFAM: polysaccharide biosynthesis protein CapD; KEGG: polysaccharide biosynthesis protein CapD.
 
 0.950
Bccel_0826
PFAM: polysaccharide biosynthesis protein CapD; KEGG: polysaccharide biosynthesis protein CapD.
 
 0.947
Bccel_4926
TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.935
Bccel_5613
TIGRFAM: non-ribosomal peptide synthetase domain protein, amino acid adenylation domain protein; KEGG: non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase, acyl carrier protein familyprotein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.932
Bccel_1867
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
 
 0.915
Bccel_3892
KEGG: hexapeptide repeat-containing transferase; TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; PFAM: transferase hexapeptide repeat containing protein.
 
 0.911
Bccel_3889
KEGG: putative N-acylneuraminate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase.
 
  
 0.872
Bccel_3888
Radical SAM domain protein; KEGG: molybdopterin cofactor synthesis protein A; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain; SMART: Elongator protein 3/MiaB/NifB.
    
 0.841
Bccel_5291
PFAM: NAD-dependent epimerase/dehydratase; KEGG: CDP-abequose synthase.
 
 
 0.835
Bccel_3891
SMART: SAF domain protein; TIGRFAM: N-acetylneuraminate synthase; KEGG: N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain-containing protein, SAF domain protein.
 
  
 0.830
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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