STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3903PFAM: FlgN family protein; KEGG: FlgN family protein. (165 aa)    
Predicted Functional Partners:
flgK
KEGG: flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein.
 
 
 0.991
Bccel_3904
KEGG: flagellar biosynthesis anti-sigma factor FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor FlgM family protein.
 
  
 0.991
Bccel_3902
KEGG: flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein.
  
 
 0.989
Bccel_3900
KEGG: flgL, flagellar hook-associated protein 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein.
 
 
 0.983
Bccel_3905
KEGG: regulatory protein MerR.
 
  
 0.978
Bccel_3654
TIGRFAM: flagellar export protein FliJ; KEGG: flagellar export protein FliJ.
  
 
 0.973
Bccel_3652
PFAM: Flagellar hook-length control protein-like protein; KEGG: flagellar hook-length control protein.
 
  
 0.949
Bccel_3896
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
 0.938
Bccel_3645
CheC, phosphatase, inhibitor of MCP methylation; KEGG: flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein, CheC domain protein.
 
  
 0.930
Bccel_3884
KEGG: flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
 
  
 0.923
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.