STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_3971PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: subtilase family protease. (234 aa)    
Predicted Functional Partners:
Bccel_3970
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: multidrug ABC transporter ATPase and permease; SMART: AAA ATPase.
  
 
 0.770
Bccel_3968
KEGG: hypothetical protein; TIGRFAM: Radical SAM peptide maturase, CXXX-repeat target, CXXX repeat peptide maturase, 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein.
 
     0.704
Bccel_3969
TIGRFAM: CXXX repeat peptide modification system protein; KEGG: cytoplasmic protein.
       0.604
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.580
Bccel_1277
KEGG: NHL repeat-containing protein.
  
     0.565
Bccel_4199
PFAM: Lanthionine synthetase C family protein, Domain of unknown function DUF4135; KEGG: hypothetical protein.
 
    0.532
Bccel_1948
KEGG: tgl, transglutaminase; HAMAP : Protein-glutamine gamma-glutamyltransferase.
  
     0.510
Bccel_1427
Thermitase; KEGG: peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
  
 
 0.503
Bccel_4529
Type 3a cellulose-binding domain protein; KEGG: cellulase., cellulose 1,4-beta-cellobiosidase; PFAM: type 3a cellulose-binding domain protein; SMART: type 3a cellulose-binding domain protein.
  
 
  0.478
Bccel_0032
PFAM: Protein beta; KEGG: hypothetical protein.
  
     0.472
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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