Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4020PFAM: Protein of unknown function DUF2600; KEGG: hypothetical protein. (354 aa)    
Predicted Functional Partners:
Bccel_4389
Anti-sigma H sporulation factor, LonB; SMART: AAA ATPase; TIGRFAM: ATP-dependent protease LonB; KEGG: ATP-dependent protease LonB; PFAM: peptidase S16 lon domain protein, AAA ATPase central domain protein.
  
     0.591
Bccel_0296
KEGG: stage II sporulation protein M; TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane.
  
     0.535
Bccel_2036
PFAM: protein of unknown function DUF322; KEGG: hypothetical protein.
  
     0.533
Bccel_1522
KEGG: sporulation integral membrane protein YlbJ; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein.
  
     0.516
Bccel_4021
Trans-hexaprenyltranstransferase; KEGG: geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.471
metG-2
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.444
Bccel_1961
KEGG: stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB.
  
    0.436
Bccel_1480
KEGG: hypothetical protein.
  
  
 0.426
Bccel_2230
KEGG: hypothetical protein.
  
  
 0.426
Bccel_0314
PFAM: Protein of unknown function DUF2953; KEGG: hypothetical protein.
  
     0.424
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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