STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4054KEGG: hypothetical protein. (322 aa)    
Predicted Functional Partners:
Bccel_4053
KEGG: Fe-only nitrogenase accessory protein AnfO; TIGRFAM: Fe-only nitrogenase accessory protein AnfO; PFAM: Nitrogenase iron-iron accessory protein AnfO.
       0.822
Bccel_3657
KEGG: flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal.
    
   0.724
Bccel_0562
PFAM: Motility protein B, N-terminal domain, OmpA/MotB domain protein; KEGG: OmpA/MotB domain-containing protein.
    
   0.671
Bccel_1404
PFAM: Motility protein B, N-terminal domain, OmpA/MotB domain protein; KEGG: OmpA/MotB.
    
   0.671
Bccel_3791
PFAM: OmpA/MotB domain protein, Motility protein B, N-terminal domain; KEGG: OmpA/MotB domain-containing protein.
    
   0.671
nfi
Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
  
  
 0.472
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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