Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4085PFAM: TROVE domain-containing protein; KEGG: TROVE domain protein. (270 aa)    
Predicted Functional Partners:
Bccel_2157
KEGG: VWA domain containing CoxE-like protein; PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A.
 
  
  0.609
Bccel_4084
PFAM: RNA ligase domain, REL/Rln2; KEGG: DNA ligase III-like protein.
       0.605
Bccel_4459
PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: metal dependent phosphohydrolase.
 
     0.580
Bccel_4461
Hypothetical protein; KEGG: ATP-dependent DNA ligase.
 
     0.559
Bccel_0020
PFAM: Lecithin:cholesterol acyltransferase; KEGG: hypothetical protein.
  
     0.547
Bccel_1656
KEGG: hypothetical protein.
  
     0.538
Bccel_2159
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: hypothetical protein.
 
  
 0.523
Bccel_4462
PFAM: tRNAHis guanylyltransferase catalytic domain, Thg1 C-terminal domain; KEGG: hypothetical protein.
  
     0.488
Bccel_0306
PFAM: protein of unknown function DUF95 transmembrane; KEGG: hypothetical protein.
  
     0.477
Bccel_2710
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: ATPase.
 
  
 0.477
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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