STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4091KEGG: peptidoglycan-binding lysin domain-containing protein; PFAM: Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM. (277 aa)    
Predicted Functional Partners:
Bccel_0510
Chitosanase; KEGG: hypothetical protein; PFAM: chitosanase, Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM.
  
     0.722
Bccel_5714
D-Ala-D-Ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
     
 0.630
Bccel_4092
KEGG: hypothetical protein.
     
 0.545
Bccel_4090
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase family protein.
       0.462
Bccel_2454
KEGG: glycoside hydrolase; PFAM: glycoside hydrolase family 18; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
    
 0.425
Bccel_5313
Beta-N-acetylhexosaminidase; KEGG: anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase; PFAM: glycoside hydrolase family 3 domain protein.
  
  
 0.406
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.