STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tlpKEGG: small, acid-soluble spore protein tlp; TIGRFAM: small, acid-soluble spore protein tlp; HAMAP : Small, acid-soluble spore protein tlp; Belongs to the Tlp family. (77 aa)    
Predicted Functional Partners:
Bccel_4568
PFAM: Coat F domain protein; KEGG: spore coat protein.
  
  
 0.785
Bccel_4157
KEGG: hypothetical protein.
 
     0.644
Bccel_2461
KEGG: gerAC1, spore germination protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.614
Bccel_5665
KEGG: signal transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein.
 
    0.594
Bccel_0296
KEGG: stage II sporulation protein M; TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane.
  
   
 0.544
Bccel_4108
KEGG: spore germination protein, amino acid permease; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
     0.536
Bccel_1886
KEGG: glycosyl hydrolase; PFAM: glycoside hydrolase family 18, Peptidoglycan-binding lysin domain-containing protein; SMART: Peptidoglycan-binding LysM, chitinase II.
  
     0.535
Bccel_2460
KEGG: spore germination permease; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
     0.509
Bccel_1099
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: small, acid-soluble spore protein, alpha/beta type.
  
  
 0.508
Bccel_2421
KEGG: hypothetical protein.
      
 0.499
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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