Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_4166PFAM: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein. (1390 aa)    
Predicted Functional Partners:
Bccel_2477
KEGG: celY, exoglucanase-2; PFAM: type 3a cellulose-binding domain protein, Carbohydrate-binding CenC domain protein, PA14 domain protein, coagulation factor 5/8 type domain protein; SMART: type 3a cellulose-binding domain protein, PA14 domain protein.
  
     0.506
Bccel_3119
KEGG: carbohydrate binding family protein; PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV.
  
     0.482
Bccel_3226
KEGG: glycosyl hydrolase family protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
     0.467
Bccel_4165
PFAM: flavoprotein; KEGG: spoVFB, dipicolinate synthase subunit B.
       0.426
Bccel_5540
PFAM: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein.
  
     0.404
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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