Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4206KEGG: Fe-S oxidoreductase; PFAM: Radical SAM domain protein, cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB. (586 aa)    
Predicted Functional Partners:
Bccel_4207
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: ABC transporter; SMART: AAA ATPase.
       0.678
Bccel_4208
PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain; KEGG: radical SAM family protein.
  
  
 0.677
Bccel_4205
PFAM: Peptidase M16C associated domain protein; KEGG: peptidase M16C associated domain-containing protein.
       0.610
Bccel_4209
Hypothetical protein.
       0.563
Bccel_3146
PFAM: UbiA prenyltransferase; KEGG: 4-hydroxybenzoate octaprenyltransferase.
   
 
 0.531
Bccel_0470
Hypothetical protein; KEGG: Fe-S oxidoreductase.
  
     0.501
Bccel_3888
Radical SAM domain protein; KEGG: molybdopterin cofactor synthesis protein A; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.488
Bccel_4214
KEGG: radical SAM domain-containing protein; TIGRFAM: 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein, 4Fe4S-binding SPASM domain.
 
     0.471
Bccel_4213
TIGRFAM: 4Fe4S-binding SPASM domain; PFAM: Radical SAM domain protein; KEGG: radical SAM domain-containing protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.468
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
    
  0.456
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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