STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4219Xenobiotic-transporting ATPase; PFAM: peptidase C39 bacteriocin processing, ABC transporter related protein, ABC transporter transmembrane region; KEGG: ABC transporter; SMART: AAA ATPase. (717 aa)    
Predicted Functional Partners:
Bccel_3699
PFAM: secretion protein HlyD family protein; KEGG: efflux transporter, rnd family, mfp subunit.
  
 0.913
Bccel_4701
Hypothetical protein; KEGG: multidrug resistance efflux pump.
  
 0.913
Bccel_4207
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: ABC transporter; SMART: AAA ATPase.
 
 
0.883
Bccel_4222
PFAM: Lanthionine synthetase C family protein; KEGG: Lanthionine synthetase C family protein.
 
   
 0.882
Bccel_4223
Lantibiotic modifying enzyme, RumM; KEGG: Lanthionine synthetase C family protein; TIGRFAM: Lantibiotic modifying enzyme, RumM; PFAM: Domain of unknown function DUF4135.
 
   
 0.869
Bccel_3970
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: multidrug ABC transporter ATPase and permease; SMART: AAA ATPase.
 
 
0.861
Bccel_3978
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: ABC transporter-like protein; SMART: AAA ATPase.
 
 
0.861
Bccel_3977
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: ABC transporter; SMART: AAA ATPase.
 
 
0.860
Bccel_1057
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: ABC transporter ATP-binding protein; SMART: AAA ATPase; overlaps another CDS with the same product name.
 
 
0.852
Bccel_1058
Xenobiotic-transporting ATPase; PFAM: ABC transporter transmembrane region, ABC transporter related protein; KEGG: multidrug ABC transporter protein; SMART: AAA ATPase; overlaps another CDS with the same product name.
 
 
0.849
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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