STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4221Sulfate-transporting ATPase; PFAM: ABC transporter related protein; KEGG: ABC transporter ATP-binding protein; SMART: AAA ATPase. (250 aa)    
Predicted Functional Partners:
Bccel_4220
PFAM: protein of unknown function DUF214; KEGG: hypothetical protein.
 
 0.997
Bccel_3697
PFAM: MacB-like periplasmic core domain, protein of unknown function DUF214; KEGG: lipoprotein release ABC transporter permease.
 0.987
Bccel_4265
PFAM: MacB-like periplasmic core domain, protein of unknown function DUF214; KEGG: permease.
 0.966
Bccel_1433
PFAM: protein of unknown function DUF214; KEGG: ABC transporter permease.
 
 0.965
Bccel_4264
PFAM: MacB-like periplasmic core domain, protein of unknown function DUF214; KEGG: permease.
 0.933
Bccel_1053
KEGG: L-cystine transport system permease TcyL; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC-type transporter, integral membrane subunit.
 
 
 
 0.920
Bccel_5421
Nickel-transporting ATPase; PFAM: ABC transporter related protein; KEGG: dipeptide/oligopeptide/nickel ABC transporter ATPase; SMART: AAA ATPase.
 
    
0.904
Bccel_5422
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related protein, Oligopeptide/dipeptide ABC transporter domain protein; KEGG: oligopeptide/dipeptide ABC transporter ATP-binding protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.901
Bccel_5610
PFAM: MacB-like periplasmic core domain, protein of unknown function DUF214; KEGG: hypothetical protein.
 0.895
Bccel_1907
PFAM: protein of unknown function DUF214, MacB-like periplasmic core domain; KEGG: lipoprotein release ABC transporter permease.
 
 0.893
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.