STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4229PFAM: spore germination B3 GerAC family protein; KEGG: Spore germination protein GerKC. (174 aa)    
Predicted Functional Partners:
Bccel_4230
KEGG: Ger(x)C family germination protein.
 
     0.943
Bccel_0861
KEGG: spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.799
Bccel_0644
PFAM: Spore germination protein; KEGG: spore germination protein, amino acid permease.
 
  
 0.797
Bccel_1085
KEGG: spore germination protein, amino acid permease; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
 
  
 0.797
Bccel_4231
Hypothetical protein; KEGG: methyltransferase type 11.
       0.773
Bccel_0646
KEGG: germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.772
Bccel_1225
KEGG: spore germination protein.
  
     0.772
Bccel_1087
KEGG: germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.768
Bccel_4113
KEGG: spore germination protein KC; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.760
Bccel_1089
PFAM: GerA spore germination protein; KEGG: spore germination protein, GerA family.
 
  
 0.746
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.