STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4257KEGG: hypothetical protein. (134 aa)    
Predicted Functional Partners:
Bccel_2731
KEGG: DNA/RNA helicase; PFAM: Protein of unknown function DUF4011, Protein of unknown function DUF3320; SMART: RAP domain protein.
  
    0.840
Bccel_0041
KEGG: hypothetical protein.
  
    0.814
rny
2,3 cyclic-nucleotide 2-phosphodiesterase; Endoribonuclease that initiates mRNA decay.
   
    0.804
Bccel_3395
PFAM: Fibronectin-binding A domain protein, protein of unknown function DUF814; KEGG: fibronectin-binding A domain-containing protein.
  
    0.802
Bccel_0276
PFAM: transposase IS4 family protein; KEGG: hypothetical protein.
   
    0.756
Bccel_0277
KEGG: transposase family protein.
   
    0.756
Bccel_4258
Hypothetical protein; KEGG: site-specific DNA-methyltransferase (adenine-specific).
  
  
 0.752
Bccel_4744
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator, Fur family; Belongs to the Fur family.
   
    0.520
Bccel_5692
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator family protein; Belongs to the Fur family.
   
    0.520
Bccel_3740
KEGG: hypothetical protein; HAMAP : UPF0473 protein; PFAM: protein of unknown function DUF1292; Belongs to the UPF0473 family.
   
    0.487
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.