STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4310KEGG: phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein. (264 aa)    
Predicted Functional Partners:
Bccel_4309
PFAM: ClpP/TepA; KEGG: ATP-dependent Clp protease, proteolytic subunit ClpP; Belongs to the peptidase S14 family.
  
 0.982
Bccel_4308
KEGG: phage major capsid protein HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Caudovirus, capsid.
 
 
 0.979
Bccel_4305
KEGG: phage head-tail adaptor; TIGRFAM: phage head-tail adaptor; PFAM: head-tail joining family protein.
 
 
 0.941
Bccel_4306
PFAM: Bacteriophage QLRG family DNA packaging; KEGG: Bacteriophage QLRG family DNA packaging.
  
   0.887
Bccel_4331
KEGG: HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
  
 0.885
Bccel_4311
PFAM: Terminase; KEGG: terminase.
 
   
 0.859
Bccel_4302
PFAM: major tail protein TP901-1; KEGG: antigen A.
  
 
 0.834
Bccel_4325
KEGG: DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6 domain protein, ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.832
Bccel_4312
PFAM: Domain of unknown function DUF4314; KEGG: hypothetical protein.
 
    0.829
Bccel_0096
KEGG: phage major capsid protein, HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Caudovirus, capsid.
 
 
 
 0.826
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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