Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_4344KEGG: hypothetical protein. (94 aa)    
Predicted Functional Partners:
Bccel_4345
Transcriptional regulator, XRE family; KEGG: putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.714
Bccel_4346
PFAM: helix-turn-helix domain protein; KEGG: hypothetical protein.
       0.431
Bccel_4341
PFAM: Protein of unknown function DUF2800; KEGG: phage-like protein.
       0.426
Bccel_4342
KEGG: hypothetical protein.
       0.426
Bccel_4343
KEGG: hypothetical protein.
       0.426
Bccel_4347
PFAM: protein of unknown function DUF955; KEGG: hypothetical protein.
       0.401
Bccel_4348
KEGG: hypothetical protein.
       0.401
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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