Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_4397KEGG: hypothetical protein. (187 aa)    
Predicted Functional Partners:
Bccel_4398
RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily; KEGG: sigma-70 family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein, Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.804
Bccel_1941
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase family protein.
   
 
 0.739
Bccel_4395
TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; KEGG: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein, PEP-utilising protein mobile region, PEP-utilising protein domain protein; Belongs to the PEP-utilizing enzyme family.
  
    0.491
Bccel_4399
PFAM: protein of unknown function DUF192; KEGG: hypothetical protein.
       0.468
Bccel_4396
KEGG: phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
       0.413
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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