Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4440KEGG: hypothetical protein. (51 aa)    
Predicted Functional Partners:
Bccel_2965
PFAM: restriction modification system DNA specificity domain-containing protein; KEGG: restriction modification system DNA specificity domain.
  
    0.664
Bccel_4261
Hypothetical protein; KEGG: restriction endonuclease S subunit.
  
    0.664
Bccel_5775
PFAM: restriction modification system DNA specificity domain-containing protein; KEGG: hypothetical protein.
  
    0.664
Bccel_2966
Site-specific DNA-methyltransferase (adenine-specific); KEGG: adenine-specific DNA-methyltransferase; PFAM: N-6 DNA methylase, N6 adenine-specific DNA methyltransferase, N12 class, N-terminal.
  
    0.561
Bccel_3054
KEGG: SNF2 family protein; PFAM: SNF2-related protein, Protein of unknown function DUF3846, helicase domain-containing protein; SMART: DEAD-like helicase, helicase domain-containing protein.
  
    0.561
Bccel_4258
Hypothetical protein; KEGG: site-specific DNA-methyltransferase (adenine-specific).
  
    0.561
Bccel_4259
KEGG: site-specific DNA-methyltransferase (adenine-specific); PFAM: N-6 DNA methylase, N6 adenine-specific DNA methyltransferase, N12 class, N-terminal.
  
    0.561
Bccel_4815
KEGG: SNF2 family protein; PFAM: SNF2-related protein, helicase domain-containing protein; SMART: DEAD-like helicase, helicase domain-containing protein.
  
    0.561
Bccel_5452
KEGG: helicase domain-containing protein; PFAM: SNF2-related protein, Protein of unknown function DUF3846; SMART: DEAD-like helicase.
  
    0.561
Bccel_5453
KEGG: SNF2 family protein.
  
    0.561
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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