STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4447PFAM: Domain of unknown function DUF4356; KEGG: serine protease. (612 aa)    
Predicted Functional Partners:
Bccel_0033
KEGG: AAA ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
    
 0.925
Bccel_2000
KEGG: peptidase S41; PFAM: peptidase S41, Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41, Tetratricopeptide repeat-containing protein.
   
 0.783
Bccel_1219
PFAM: Rieske [2Fe-2S] iron-sulfur domain-containing protein; KEGG: glycine/D-amino acid oxidase, deaminating.
  
 0.708
Bccel_1679
KEGG: acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein.
    
  0.695
alaS
Alanine-tRNA ligase, eukaryota/bacteria; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 
 0.686
Bccel_3980
KEGG: isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isopropylmalate dehydrogenase-like domain; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
     
 0.666
Bccel_3905
KEGG: regulatory protein MerR.
   
 
  0.658
Bccel_0152
PFAM: copper amine oxidase-like domain-containing protein; KEGG: peptidase S41.
 
 
0.654
Bccel_5676
PFAM: NUDIX hydrolase; KEGG: ADP-ribose pyrophosphatase.
    
 0.651
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
   0.644
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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