STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4481KEGG: MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE. (454 aa)    
Predicted Functional Partners:
Bccel_2398
PFAM: phosphoesterase PA-phosphatase related protein; KEGG: PAP2 superfamily protein.
   
 
 0.759
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
  
 0.749
Bccel_3755
SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain-containing protein; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain-containing protein, Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain-containing protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.702
Bccel_4480
Long-chain-fatty-acid--CoA ligase; KEGG: AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase.
  
    0.666
Bccel_4183
Putative transcriptional regulator, TetR family; KEGG: hypothetical protein.
 
   
 0.554
msrA
Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.539
Bccel_4482
PFAM: sulfatase; KEGG: sulfatase.
       0.496
cinA
Competence-damaged protein; SMART: molybdopterin binding domain-containing protein; TIGRFAM: competence/damage-inducible protein CinA, CinA domain protein, molybdenum cofactor synthesis domain protein; KEGG: competence/damage-inducible protein CinA; HAMAP : Competence-damaged protein; PFAM: CinA domain protein, molybdopterin binding domain-containing protein.
 
   
 0.481
Bccel_1413
Protein of unknown function UPF0047; KEGG: secondary thiamine-phosphate synthase enzyme; TIGRFAM: protein of unknown function UPF0047; PFAM: protein of unknown function UPF0047.
   
    0.467
Bccel_2105
KEGG: hypothetical protein; TIGRFAM: protein of unknown function UPF0047; PFAM: protein of unknown function UPF0047.
   
    0.467
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.