STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4530Hypothetical protein; KEGG: fold5, putative acetyltransferases and hydrolases with the alpha/beta hydrolase Fold. (480 aa)    
Predicted Functional Partners:
Bccel_1682
KEGG: thioester reductase; TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain-containing protein.
 
  
 0.865
Bccel_1900
TIGRFAM: Conserved hypothetical protein CHP00147; PFAM: diacylglycerol kinase catalytic region; KEGG: hypothetical protein; SMART: diacylglycerol kinase catalytic region.
     
 0.798
Bccel_0979
Acetaldehyde dehydrogenase (acetylating); KEGG: alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase, Aldehyde Dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.797
Bccel_3397
KEGG: peptidoglycan N-acetylglucosamine deacetylase; PFAM: polysaccharide deacetylase, glycoside hydrolase family 18; SMART: chitinase II.
  
 
 0.792
Bccel_1000
PFAM: diacylglycerol kinase; KEGG: diacylglycerol kinase.
     
 0.790
rplQ
KEGG: 50S ribosomal protein L17; HAMAP : 50S ribosomal protein L17; PFAM: ribosomal protein L17.
  
 
   0.783
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
   0.759
rpmA
TIGRFAM: ribosomal protein L27; HAMAP : 50S ribosomal protein L27; KEGG: 50S ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.751
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.748
rpsP
TIGRFAM: ribosomal protein S16; HAMAP : 30S ribosomal protein S16; KEGG: 30S ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.744
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.