Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4560PFAM: protein of unknown function UPF0016; KEGG: hypothetical protein. (368 aa)    
Predicted Functional Partners:
Bccel_4561
PFAM: protein of unknown function DUF6 transmembrane; KEGG: DMT(drug/metabolite transporter) superfamily permease.
  
  
 0.652
Bccel_2722
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: P-type ATPase, translocating; PFAM: cation transporting ATPase domain protein; overlaps another CDS with the same product name.
    
 
 0.562
Bccel_2723
SMART: cation transporting ATPase domain protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: P-type HAD superfamily ATPase; PFAM: E1-E2 ATPase-associated domain protein, cation transporting ATPase domain protein, Haloacid dehalogenase domain protein hydrolase; overlaps another CDS with the same product name.
    
 
 0.562
Bccel_4423
SMART: cation transporting ATPase domain protein; TIGRFAM: calcium-translocating P-type ATPase, SERCA-type, calcium-translocating P-type ATPase, PMCA-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: P-type HAD superfamily ATPase; PFAM: E1-E2 ATPase-associated domain protein, cation transporting ATPase domain protein, Haloacid dehalogenase domain protein hydrolase.
    
 
 0.562
Bccel_5321
PFAM: ATPase E1-E2 type; KEGG: hypothetical protein.
    
 
 0.562
Bccel_5707
TIGRFAM: calcium-translocating P-type ATPase, PMCA-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: calcium-translocating P-type ATPase, PMCA-type; PFAM: cation transporting ATPase domain protein, Haloacid dehalogenase domain protein hydrolase, E1-E2 ATPase-associated domain protein.
    
 
 0.562
Bccel_5708
SMART: cation transporting ATPase domain protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: plasma-membrane calcium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein, cation transporting ATPase domain protein.
    
 
 0.562
Bccel_4562
PFAM: nitroreductase; KEGG: nitroreductase.
       0.495
Bccel_4559
Hypothetical protein.
       0.471
Bccel_3839
PFAM: UspA domain-containing protein; KEGG: universal stress family protein.
  
     0.455
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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