STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4563SMART: regulatory protein MarR; KEGG: MarR family transcriptional regulator. (183 aa)    
Predicted Functional Partners:
Bccel_1113
PFAM: protein of unknown function UPF0157; KEGG: hypothetical protein.
  
  
  0.772
Bccel_4564
Palmitoyl-CoA hydrolase; KEGG: M1_2542, putative acyl-CoA thioesterase; PFAM: BAAT/Acyl-CoA thioester hydrolase, acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase.
       0.747
Bccel_1238
KEGG: MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
  
   
 0.701
Bccel_4565
PFAM: DNA alkylation repair enzyme; KEGG: DNA alkylation repair enzyme.
       0.684
Bccel_5200
PFAM: GCN5-related N-acetyltransferase; KEGG: N-acetyltransferase GCN5.
  
   
 0.640
Bccel_4801
PFAM: Glyoxalase-like domain; KEGG: glyoxalase.
 
  
 0.603
Bccel_1479
6-deoxyerythronolide-B synthase; PFAM: KR domain protein, acyl carrier protein familyprotein, Beta-ketoacyl synthase, Acyl transferase; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.595
Bccel_2229
6-deoxyerythronolide-B synthase, 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Acyl transferase, Beta-ketoacyl synthase, KR domain protein, acyl carrier protein familyprotein; KEGG: polyketide synthase family protein; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, acyl transferase domain-containing protein.
  
 
 0.595
Bccel_3387
PFAM: Protein of unknown function DUF3788; KEGG: hypothetical protein.
  
  
 0.587
Bccel_4600
PFAM: TfoX domain-containing protein; KEGG: TfoX C-terminal domain-containing protein.
  
     0.565
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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