STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4591PFAM: Uncharacterized conserved protein UCP021328; KEGG: hypothetical protein. (136 aa)    
Predicted Functional Partners:
Bccel_4801
PFAM: Glyoxalase-like domain; KEGG: glyoxalase.
 
     0.706
Bccel_4590
Hypothetical protein.
       0.668
Bccel_5200
PFAM: GCN5-related N-acetyltransferase; KEGG: N-acetyltransferase GCN5.
  
     0.631
Bccel_4624
KEGG: hypothetical protein.
  
     0.625
Bccel_1418
Hypothetical protein; KEGG: N-acetyltransferase GCN5.
  
     0.553
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.534
Bccel_4724
KEGG: AraC family transcriptional regulator; PFAM: transcription activator effector binding protein; SMART: transcription activator effector binding protein.
  
     0.532
Bccel_3961
KEGG: AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC domain-containing protein; SMART: Helix-turn-helix, AraC domain-containing protein.
  
     0.530
Bccel_4592
Glycosyltransferase, MGT family; KEGG: macrolide glycosyltransferase; TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase.
 
     0.511
Bccel_2596
Purine operon repressor, PurR; KEGG: pur operon repressor; TIGRFAM: pur operon repressor; PFAM: purine repressor, phosphoribosyltransferase.
   
    0.495
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.