STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4604PFAM: Pyridoxamine 5'-phosphate oxidase-related; KEGG: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein. (153 aa)    
Predicted Functional Partners:
Bccel_4603
PFAM: Methyltransferase type 11; KEGG: type 12 methyltransferase.
       0.671
Bccel_4605
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, PAS fold-3 domain protein, histidine kinase A domain protein; KEGG: PAS/PAC sensor domain-containing signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAC repeat-containing protein, PAS domain containing protein.
       0.623
Bccel_4602
KEGG: hypothetical protein; PFAM: Stress responsive alpha-beta barrel domain-containing protein; SMART: Stress responsive alpha-beta barrel domain-containing protein.
 
   
 0.542
Bccel_2017
KEGG: pyridoxal phosphate synthase yaaE subunit; TIGRFAM: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; PFAM: SNO glutamine amidotransferase.
     
 0.437
Bccel_4623
PFAM: Abortive infection protein; KEGG: abortive infection protein.
 
     0.431
pdxS
Pyridoxal biosynthesis lyase pdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
    
 0.426
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
    0.400
ldh-2
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
    0.400
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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