Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4606KEGG: metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein; SMART: metal-dependent phosphohydrolase HD region. (356 aa)    
Predicted Functional Partners:
Bccel_5083
PFAM: Protein of unknown function DUF3369, metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: response regulator.
 
   
 0.781
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
     
  0.729
Bccel_0685
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein.
 
 
 0.617
Bccel_2536
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: diguanylate cyclase domain-containing protein; SMART: GGDEF domain containing protein.
  
 
 
 0.617
Bccel_1092
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: response regulator; SMART: GGDEF domain containing protein; overlaps another CDS with the same product name.
 
 
 
 0.590
Bccel_3602
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain-containing protein, GGDEF domain containing protein, PAS domain containing protein; TIGRFAM: diguanylate cyclase, PAS sensor protein; KEGG: PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; PFAM: EAL domain-containing protein, GGDEF domain containing protein.
 
  
 0.579
Bccel_1504
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.575
Bccel_5564
Methionine synthase; PFAM: homocysteine S-methyltransferase, cobalamin B12-binding domain protein, Methionine synthase B12-binding module cap domain protein, dihydropteroate synthase DHPS; KEGG: homocysteine S-methyltransferase; SMART: Methionine synthase B12-binding module cap domain protein.
     
 0.575
Bccel_4848
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein.
 
 
 
 0.567
Bccel_4665
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: diguanylate cyclase; SMART: GGDEF domain containing protein.
  
   
 0.566
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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