Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bccel_4652PFAM: TraB determinant protein; KEGG: GumN. (491 aa)    
Predicted Functional Partners:
Bccel_4651
PFAM: peptidase A8 signal peptidase II; KEGG: hypothetical protein.
       0.671
Bccel_3653
KEGG: hypothetical protein.
    
   0.655
Bccel_1941
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase family protein.
  
     0.617
Bccel_0687
PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein.
  
     0.585
Bccel_0928
PFAM: copper amine oxidase-like domain-containing protein, peptidase domain protein; KEGG: copper amine oxidase-like domain-containing protein.
  
     0.569
Bccel_4837
PFAM: S-layer domain-containing protein; KEGG: S-layer-like domain-containing protein.
  
     0.565
Bccel_4500
PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein.
  
     0.519
Bccel_1806
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase-like domain-containing protein.
  
     0.510
Bccel_4424
PFAM: copper amine oxidase-like domain-containing protein; KEGG: copper amine oxidase family protein.
  
     0.493
Bccel_5314
KEGG: transglutaminase; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
  
     0.484
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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