STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4659KEGG: putative transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR. (107 aa)    
Predicted Functional Partners:
Bccel_4660
TIGRFAM: heavy metal translocating P-type ATPase, ATPase, P-type (transporting), HAD superfamily, subfamily IC, cadmium-translocating P-type ATPase; KEGG: cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein, Haloacid dehalogenase domain protein hydrolase, Heavy metal transport/detoxification protein.
 
  
 0.926
Bccel_3355
TIGRFAM: heavy metal translocating P-type ATPase, copper ion binding protein, copper-translocating P-type ATPase, ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: copper/silver-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein, Heavy metal transport/detoxification protein, Haloacid dehalogenase domain protein hydrolase.
  
  
 0.634
Bccel_0426
KEGG: cytidyltransferase-related domain-containing protein; TIGRFAM: cytidyltransferase-related domain protein; PFAM: Citrate lyase ligase domain protein.
   
 
  0.478
birA
BirA bifunctional protein, biotin operon repressor and biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.453
Bccel_1449
CoA-disulfide reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, pyridine nucleotide-disulfide oxidoreductase dimerization region, SirA-like domain-containing protein, Rhodanese-like protein, FAD-dependent pyridine nucleotide-disulfide oxidoreductase; KEGG: NAD(FAD)-dependent dehydrogenase; SMART: Rhodanese-like protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.447
Bccel_4672
PFAM: Silent information regulator protein Sir2; KEGG: NAD-dependent deacetylase.
  
 
  0.426
Bccel_3354
Hypothetical protein; KEGG: copper-translocating P-type ATPase.
  
  
 0.404
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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