Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bccel_4661PFAM: major facilitator superfamily MFS_1; KEGG: major facilitator superfamily transporter. (681 aa)    
Predicted Functional Partners:
Bccel_2399
PFAM: major facilitator superfamily MFS_1; KEGG: EmrB/QacA subfamily drug resistance transporter; overlaps another CDS with the same product name.
 
   
 0.703
Bccel_1504
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
  0.641
Bccel_5564
Methionine synthase; PFAM: homocysteine S-methyltransferase, cobalamin B12-binding domain protein, Methionine synthase B12-binding module cap domain protein, dihydropteroate synthase DHPS; KEGG: homocysteine S-methyltransferase; SMART: Methionine synthase B12-binding module cap domain protein.
     
  0.641
Bccel_4662
PFAM: regulatory protein TetR; KEGG: TetR family transcriptional regulator.
     
 0.589
Bccel_2894
Hypothetical protein; KEGG: phosphate transporter.
  
   
 0.561
pheA
KEGG: prephenate dehydratase; PFAM: prephenate dehydratase, amino acid-binding ACT domain-containing protein.
 
  
 0.498
Bccel_4682
KEGG: Long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase, Xylose isomerase domain-containing protein TIM barrel, Domain of unknown function DUF4009.
    
 0.491
Bccel_3671
KEGG: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein.
    
 0.481
Bccel_4593
PFAM: Transcriptional regulator PadR, transcriptional regulator PadR family protein; KEGG: putative transcriptional regulator.
 
    0.461
Bccel_4801
PFAM: Glyoxalase-like domain; KEGG: glyoxalase.
  
  
 0.457
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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