STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4677RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily; KEGG: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2, sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa)    
Predicted Functional Partners:
Bccel_1521
KEGG: ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein, Sigma-70 region 4 type 2.
  
     0.774
Bccel_4049
RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily; KEGG: sigma-70 family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2, sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
Bccel_4678
KEGG: hypothetical protein.
       0.773
Bccel_5376
RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily; KEGG: sigma-70 family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2, sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.771
Bccel_5104
RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily; KEGG: RNA polymerase sigma subunit; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein, Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.717
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.711
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.688
Bccel_5212
RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily; KEGG: ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2, sigma-70 region 2 domain protein.
  
     0.682
Bccel_5646
PFAM: S-layer domain-containing protein; KEGG: S-layer protein.
  
 0.607
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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