STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4697DNA mismatch repair protein MutS domain protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (649 aa)    
Predicted Functional Partners:
Bccel_1022
PFAM: DNA mismatch repair protein MutS domain protein, MutS II domain protein; KEGG: DNA mismatch repair protein MutS.
 
 0.974
rpsU
TIGRFAM: ribosomal protein S21; HAMAP : 30S ribosomal protein S21; KEGG: 30S ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
   0.802
Bccel_4700
PFAM: protein of unknown function DUF990; KEGG: hypothetical protein; overlaps another CDS with the same product name.
 
     0.802
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
   0.794
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
  
 
   0.782
Bccel_4698
KEGG: ABC transporter; PFAM: ABC transporter related protein; SMART: AAA ATPase.
       0.773
Bccel_4699
PFAM: protein of unknown function DUF990; KEGG: ABC transporter multidrug-family permease; overlaps another CDS with the same product name.
       0.773
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.769
rpmI
TIGRFAM: ribosomal protein L35; HAMAP : 50S ribosomal protein L35; KEGG: 50S ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.768
rpmB
TIGRFAM: ribosomal protein L28; HAMAP : 50S ribosomal protein L28; KEGG: 50S ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.763
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.