STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4698KEGG: ABC transporter; PFAM: ABC transporter related protein; SMART: AAA ATPase. (328 aa)    
Predicted Functional Partners:
Bccel_4699
PFAM: protein of unknown function DUF990; KEGG: ABC transporter multidrug-family permease; overlaps another CDS with the same product name.
 
  
 0.968
Bccel_4700
PFAM: protein of unknown function DUF990; KEGG: hypothetical protein; overlaps another CDS with the same product name.
 
  
 0.958
Bccel_0515
PFAM: protein of unknown function DUF990; KEGG: ABC transporter permease; overlaps another CDS with the same product name.
 
  
 0.864
Bccel_2457
PFAM: protein of unknown function DUF990; KEGG: hypothetical protein.
 
  
 0.864
Bccel_3609
PFAM: protein of unknown function DUF990; KEGG: hypothetical protein.
 
  
 0.864
Bccel_2456
PFAM: protein of unknown function DUF990; KEGG: ABC transporter permease.
 
  
 0.823
Bccel_3610
PFAM: protein of unknown function DUF990; KEGG: hypothetical protein.
 
  
 0.823
Bccel_0516
PFAM: protein of unknown function DUF990; KEGG: ABC transporter permease; overlaps another CDS with the same product name.
 
  
 0.822
Bccel_4697
DNA mismatch repair protein MutS domain protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.773
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.