STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4741KEGG: hypothetical protein. (106 aa)    
Predicted Functional Partners:
Bccel_4748
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
     0.808
Bccel_4747
PFAM: Cobyrinic acid ac-diamide synthase, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: cobyrinic acid a,c-diamide synthase; overlaps another CDS with the same product name.
 
     0.783
Bccel_4746
PFAM: Cobyrinic acid ac-diamide synthase, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: 4Fe-4S ferredoxin; overlaps another CDS with the same product name.
 
     0.779
Bccel_4745
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
     0.750
Bccel_1234
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
     0.712
Bccel_1233
PFAM: Cobyrinic acid ac-diamide synthase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: P-loop ATPase, MinD superfamily; overlaps another CDS with the same product name.
 
     0.699
Bccel_1232
PFAM: Cobyrinic acid ac-diamide synthase, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: cobyrinic acid ac-diamide synthase; overlaps another CDS with the same product name.
 
     0.693
Bccel_1231
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: hypothetical protein.
 
     0.593
Bccel_4740
KEGG: hypothetical protein; HAMAP : UPF0251 protein; PFAM: protein of unknown function DUF134; Belongs to the UPF0251 family.
 
     0.589
Bccel_4742
KEGG: MRP/NBP35 family ATP-binding protein.
       0.545
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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