STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4760KEGG: helicase c2; PFAM: helicase c2; SMART: helicase c2. (761 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.962
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.961
Bccel_5393
KEGG: HRDC domain-containing protein; PFAM: DNA helicase PIF1, ATP-dependent, HRDC domain protein; SMART: HRDC domain protein, AAA ATPase.
  
 0.940
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.936
rpoZ-2
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.936
Bccel_0479
KEGG: DNA polymerase I; PFAM: 5'-3' exonuclease, resolvase-like domain-containing protein, 5'-3' exonuclease, subdomain-containing protein; SMART: 5'-3' exonuclease, Helix-hairpin-helix domain protein class 2.
   
 0.933
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 0.933
Bccel_0007
PFAM: Phospholipase D-like domain; KEGG: hypothetical protein.
   
 0.911
Bccel_0080
KEGG: type III restriction protein res subunit; PFAM: type III restriction protein res subunit, helicase domain-containing protein; SMART: DEAD-like helicase, helicase domain-containing protein.
   
 0.911
Bccel_3001
KEGG: helicase domain-containing protein; PFAM: type III restriction protein res subunit, helicase domain-containing protein, Phospholipase D-like domain; SMART: DEAD-like helicase, helicase domain-containing protein.
   
 0.911
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.