STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4764PFAM: protein of unknown function DUF955; KEGG: hypothetical protein. (186 aa)    
Predicted Functional Partners:
Bccel_4763
SMART: helix-turn-helix domain protein; KEGG: XRE family transcriptional regulator.
 
  
 0.943
Bccel_4762
KEGG: hypothetical protein.
 
     0.868
Bccel_2976
SMART: helix-turn-helix domain protein; KEGG: XRE family transcriptional regulator.
 
  
 0.814
Bccel_2975
KEGG: hypothetical protein.
 
     0.757
Bccel_3015
PFAM: Protein of unknown function DUF3846; KEGG: hypothetical protein.
  
     0.661
Bccel_4775
PFAM: Protein of unknown function DUF3846; KEGG: hypothetical protein.
  
     0.604
Bccel_0004
PFAM: Recombinase, Recombinase zinc beta ribbon domain; KEGG: recombinase; overlaps another CDS with the same product name.
 
     0.533
Bccel_2991
PFAM: metal-dependent phosphohydrolase HD sub domain-containing protein; KEGG: HD superfamily hydrolase.
  
     0.513
Bccel_0279
PFAM: integrase family protein; KEGG: integrase family protein; Belongs to the 'phage' integrase family.
 
  
 0.509
Bccel_2971
KEGG: recombinase; PFAM: Recombinase, Resolvase domain-containing protein, Recombinase zinc beta ribbon domain; SMART: Resolvase domain-containing protein.
 
     0.509
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.