Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bccel_4790KEGG: hypothetical protein. (277 aa)    
Predicted Functional Partners:
Bccel_4791
PFAM: SpoVG family protein; KEGG: SpoVG family protein; Belongs to the SpoVG family.
       0.671
Bccel_4789
KEGG: hypothetical protein.
       0.654
Bccel_4788
KEGG: hypothetical protein.
       0.619
Bccel_4786
SAF domain protein; KEGG: hypothetical protein; PFAM: SAF domain protein; SMART: SAF domain protein.
       0.553
Bccel_4783
KEGG: hypothetical protein.
       0.547
Bccel_4785
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: hypothetical protein.
       0.547
Bccel_4787
PFAM: peptidase A24A prepilin type IV; KEGG: peptidase A24A prepilin type IV.
       0.543
Bccel_4792
KEGG: hypothetical protein.
       0.526
Bccel_4784
PFAM: type II secretion system protein E; KEGG: type II secretion system protein E.
       0.520
Bccel_4780
KEGG: hypothetical protein.
       0.506
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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